Optimal vein density in artificial and real leaves

The long evolution of vascular plants has resulted in a tremendous
variety of natural networks responsible for the evaporatively
driven transport of water. Nevertheless, little is known about the
physical principles that constrain vascular architecture. Inspired by
plant leaves, we used microfluidic devices consisting of simple
parallel channel networks in a polymeric material layer, permeable
to water, to study the mechanisms of and the limits to evaporationdriven flow. We show that the flow rate through our biomimetic
leaves increases linearly with channel density (1/d) until the distance between channels (d) is comparable with the thickness of the
polymer layer (), above which the flow rate saturates. A comparison with the plant vascular networks shows that the same optimization criterion can be used to describe the placement of veins
in leaves. These scaling relations for evaporatively driven flow
through simple networks reveal basic design principles for the
engineering of evaporation–permeation-driven devices, and highlight the role of physical constraints on the biological design of
leaves.

Signal processing by HOG MAP kinase pathway

Signaling pathways relay information about changes in the external environment so that cells can respond appropriately. How
much information a pathway can carry depends on its bandwidth.
We designed a microfluidic device to reliably change the environment of single cells over a range of frequencies. Using this device,
we measured the bandwidth of the Saccharomyces cerevisiae
signaling pathway that responds to high osmolarity. This prototypical pathway, the HOG pathway, is shown to act as a low-pass
filter, integrating the signal when it changes rapidly and following
it faithfully when it changes more slowly. We study the dependence of the pathway’s bandwidth on its architecture. We measure
previously unknown bounds on all of the in vivo reaction rates
acting in this pathway. We find that the two-component Ssk1
branch of this pathway is capable of fast signal integration,
whereas the kinase Ste11 branch is not. Our experimental techniques can be applied to other signaling pathways, allowing the
measurement of their in vivo kinetics and the quantification of
their information capacity.

Limbless undulatory propulsion on land

We analyze the lateral undulatory motion of a natural or artificial
snake or other slender organism that ‘‘swims’’ on land by propagating retrograde flexural waves. The governing equations for the
planar lateral undulation of a thin filament that interacts frictionally with its environment lead to an incomplete system. Closures
accounting for the forces generated by the internal muscles and
the interaction of the filament with its environment lead to a
nonlinear boundary value problem, which we solve using a combination of analytical and numerical methods. We find that the
primary determinant of the shape of the organism is its interaction
with the external environment, whereas the speed of the organism
is determined primarily by the internal muscular forces, consistent
with prior qualitative observations. Our model also allows us to
pose and solve a variety of optimization problems such as those
associated with maximum speed and mechanical efficiency, thus
defining the performance envelope of this mode of locomotion.

A quantitative analysis of contractility in active cytoskeletal protein networks

Cells actively produce contractile forces for a variety of processes including cytokinesis and motility. Contractility is
known to rely on myosin II motors which convert chemical energy from ATP hydrolysis into forces on actin filaments. However, the
basic physical principles of cell contractility remain poorly understood. We reconstitute contractility in a simplified model system of
purified F-actin, muscle myosin II motors, and a-actinin cross-linkers. We show that contractility occurs above a threshold motor
concentration and within a window of cross-linker concentrations. We also quantify the pore size of the bundled networks and find
contractility to occur at a critical distance between the bundles. We propose a simple mechanism of contraction based on myosin
filaments pulling neighboring bundles together into an aggregated structure. Observations of this reconstituted system in both bulk
and low-dimensional geometries show that the contracting gels pull on and deform their surface with a contractile force of ;1mN, or
;100 pN per F-actin bundle. Cytoplasmic extracts contracting in identical environments show a similar behavior and dependence
on myosin as the reconstituted system. Our results suggest that cellular contractility can be sensitively regulated by tuning the
(local) activity of molecular motors and the cross-linker density and binding affinity.

Life and times of a cellular bleb

Blebs are spherical cellular protrusions that occur in many physiological situations. Two distinct phases make up
the life of a bleb, each of which have their own biology and physics: expansion, which lasts ;30 s, and retraction, which lasts
;2 min. We investigate these phases using optical microscopy and simple theoretical concepts, seeking information on
blebbing itself, and on cytomechanics in general. We show that bleb nucleation depends on pressure, membrane-cortex
adhesion energy, and membrane tension, and test this experimentally. Bleb growth occurs through a combination of bulk flow of
lipids and delamination from the cell cortex via the formation and propagation of tears. In extreme cases, this can give rise to a
traveling wave around the cell periphery, known as ‘‘circus movement.’’ When growth stalls, an actin cortex reforms under the
bleb membrane, and retraction starts, driven by myosin-II. Using flicker spectroscopy, we find that retracting blebs are fivefold
more rigid than expanding blebs, an increase entirely explained by the properties of the newly formed cortical actin mesh.
Finally, using artificially nucleated blebs as pressure sensors, we show that cells rounded up in mitosis possess a substantial
intracellular pressure.

Power-limited contraction dynamics of Vorticella convallaria: an ultrafast biological spring

Vorticella convallaria is one of the fastest and most powerful cellular machines. The cell body is attached to a
substrate by a slender stalk containing a polymeric structure—the spasmoneme. Helical coiling of the stalk results from rapid
contraction of the spasmoneme, an event mediated by calcium binding to a negatively charged polymeric backbone. We use
high speed imaging to measure the contraction velocity as a function of the viscosity of the external environment and find that
the maximum velocity scales inversely with the square root of the viscosity. This can be explained if the rate of contraction is
ultimately limited by the power delivered by the actively contracting spasmoneme. Microscopically, this scenario would arise
if the mechanochemical wave that propagates along the spasmoneme is faster than the rate at which the cell body can respond
due to its large hydrodynamic resistance. We corroborate this by using beads as markers on the stalk and find that the
contraction starts at the cell body and proceeds down the stalk at a speed that exceeds the velocity of the cell body.

Settling and swimming of flexible fluid lubricated foils

We study the dynamics of a flexible foil immersed in a fluid and moving close to a rigid wall.
Lubrication theory allows us to derive equations of motion for the foil and thus examine the passive
settling and the active swimming of a foil. This also allows us to partly answer the long-standing question
in cartoon physics—can carpets fly? Our analysis suggests a region in parameter space where one may
realize this dream and move the virtual towards reality.

Mechanosensation and mechanical loads modulate the locomotory gait of swimming C. elegans

Animals move through their environments by selecting
gaits that are adapted to the physical nature of their
surroundings. The nematode Caenorhabditis elegans swims
through fluids or crawls on surfaces by propagating
flexural waves along its slender body and offers a unique
opportunity for detailed analysis of locomotory gait at
multiple levels including kinematics, biomechanics and the
molecular and physiological operation of sensory and
motor systems. Here, we study the swimming gait of C.
elegans in viscous fluids in the range 0.05–50·Pa s. We find
that the spatial form of the swimming gait does not vary
across this range of viscosities and that the temporal
frequency of the swimming gait only decreases by about
20% with every 10-fold increase in viscosity. Thus, C.
elegans swims in low gear, such that its musculature can
deliver mechanical force and power nearly 1000-fold
higher than it delivers when swimming in water. We find
that mutations that disrupt mechanosensation, or the laser
killing of specific touch receptor neurons, increase the
temporal frequency of the undulating gait, revealing a
novel effect of mechanosensory input in regulating the
putative central pattern generator that produces
locomotion. The adaptability of locomotory gait in C.
elegans may be encoded in sensory and motor systems that
allow the worm to respond to its own movement in
different physical surroundings.

Force of an actin spring

Cellular movements are produced by forces. Typically, cytoskeletal proteins such as microtubules and actin
filaments generate forces via polymerization or in conjunction with molecular motors. However, the fertilization of a Limulus
polyphemus egg involves a third type of actin-based cellular engine—a biological spring. During the acrosome reaction, a
60-mm long coiled and twisted bundle of actin filaments straightens and extends from a sperm cell, penetrating the vitelline layer
surrounding the egg. A subtle overtwist of 0.2/subunit underlies the mechanochemical basis for the extension of this actin
spring. Upon calcium activation, this conformational strain energy is converted to mechanical work, generating the force required to extend the bundle through the vitelline layer. In this article, we stall the extension of the acrosome bundle in agarose
gels of different concentrations. From the stall forces, we estimate a maximum force of 2 nN and a puncturing pressure of 1.6
MPa. We show the maximum force of extension is three times larger than the force required to puncture the vitelline layer. Thus,
the elastic strain energy stored in the acrosome bundle is more than sufficient to power the acrosome reaction through the
egg envelope.

The universal dynamics of cell spreading

Cell adhesion and motility depend strongly on the
interactions between cells and extracellular matrix
(ECM) substrates. When plated onto artificial adhesive
surfaces, cells first flatten and deform extensively
as they spread. At the molecular level, the interaction
of membrane-based integrins with the ECM has been
shown to initiate a complex cascade of signaling
events [1], which subsequently triggers cellular morphological changes and results in the generation of
contractile forces [2]. Here, we focus on the early
stages of cell spreading and probe their dynamics by
quantitative visualization and biochemical manipulation with a variety of cell types and adhesive surfaces,
adhesion receptors, and cytoskeleton-altering drugs.
We find that the dynamics of adhesion follows a universal power-law behavior. This is in sharp contrast with
the common belief that spreading is regulated by either
the diffusion of adhesion receptors toward the growing
adhesive patch [3–5] or by actin polymerization [6–8].
To explain this, we propose a simple quantitative and
predictive theory that models cells as viscous adhesive cortical shells enclosing a less viscous interior.
Thus, although cell spreading is driven by well-identified biomolecular interactions, it is dynamically limited
by its mesoscopic structure and material properties.